The MRI Research Program is currently in the early stages of implementing its own docker-based processing cluster that will allow researchers access to the ABCD processing pipelines as well as other analysis packages.
Our previous grid-engine based scheduling system is currently available on our legacy cluster and has the following software packages available:
AFNI - an open-source environment for processing and displaying functional MRI data
FSL - A software library with image analysis tools for functional, structural, and diffusion MRI brain imaging data.
Freesurfer - a set of tools for the analysis of structional and functional brain imaging data.
SPM - a suite of MATLAB tools for the analysis of brain imaging data sequences
For access and account information, email firstname.lastname@example.org
Software available via network on an additional server:
LCModel - Automatic quantitation of in vivo proton MR spectra.
JMRUI - a software package for advanced time-domain analysis of magnetic resonance spectroscopy (MRS) and spectroscopic imaging (MRSI) data.
As a means for running both computationally intensive applications and storing vast amounts of data, the Center for Computational Biology and Bioinformatics (C2B2) provides a computational cluster, HPC, to NYSPI and associated projects.
For information about pricing for C2B2, please see:
For Information about the cluster, upgrade, and hardware architecture, please see: